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Volume 3, Issue 9
November 2003


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In This Issue
Protecting Our Ports

A Nano-Transistor for Biology Not Bits

A Bay In Flux

The Right Person for the Job

Berkeley Engineers: Changing Our World

Dean's Digest

Lab Notes Update

Your Turn

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Lab Notes, Research from the College of Engineering

A Bay In Flux
by David Pescovitz

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Professor Stacey

UC Berkeley researcher Mark Stacey calls the entire San Francisco Bay his "laboratory."

UC Berkeley researcher Mark Stacey calls the entire San Francisco Bay his "laboratory." The professor of civil and environmental engineering analyzes the physics of the 1,600 square mile waterway between the Pacific Ocean and the Sacramento-San Joaquin Delta. By studying the estuary, from centimeter scale turbulence to the seasonal transport of salt between the ocean and the Bay, Stacey's research could impact everything from the preservation of delicate ecosystems to the quality of our drinking water.

"To understand how everything from nutrients and salt to contaminants and invasive species move through the Bay, you have to understand the basic physics of water flow," Stacey says.

Stacey's research is focused on ocean-estuary exchanges, the flow between freshwater from upstream river systems and fluxes from the open sea. In the San Francisco Bay, Stacey explains, the relationship between the coastal ocean and the estuary is largely unknown. But through a combination of boat trips around the Bay and computer simulations, Stacey and his students are developing predictive models of how water and, more importantly, the various materials in the mix, is transported through the estuary system.

Bay

The largest harbor on the US Pacific Coast, the San Francisco Bay-Delta Estuary contains over 90 percent of the state's coastal wetlands and supports 750 species of fish, animals, and birds.

For example, one of Stacey's Bay-based research efforts is concentrated on the movement of salt in the water. The Bay's salt field, or seawater front, shifts within the Bay in response to myriad factors like tidal dynamics and freshwater inflows from rivers. The salt field, Stacey says, is partially at the mercy of the state's water managers. Opening reservoir valves upstream pushes the salt field out of the Bay while scaling down the flow from the reservoirs causes the salt to flow back into the Bay.

"Where the salt field sits during different seasons of the year has implications for the health of the Bay's ecosystem," Stacey says. "Certain species need it to be pushed downstream to the ocean during the spring or back into the Bay during the fall."

Still, the water managers must cater to the needs of the Bay's human population as well. A vast majority of the state's population drinks at least some water from the Delta, and too much salinity in the Bay can jeopardize drinking water supplies.

"We'd like to manage our freshwater resources in a way that the position of the salt field in the Bay doesn't compromise either drinking water quality or the safety of the ecosystem," he says.

Prof Stacey and crew

Through field studies, Mark Stacey (left) and his graduate students also hope to gain an understanding of where sediments dredged from the Bay--to clear the way for boats, for instance-- eventually settle. This data could help determine the availability of sediment necessary for marshland restoration in the South Bay.

To gather their data, Stacey and his team frequently embark on Bay cruises aboard a small boat outfitted with a variety of sensing instruments. An Acoustic Doppler Current Profiler (ADCP) converts the echoes of audio waves into a three-dimensional representation of the current. Meanwhile, other sensors immersed in the water keep track of temperature and salinity while also measuring chlorophyll concentration, indicative of what's living in the water.

The key to gathering useful data is measuring flows and currents on wide time scales, from "turbulent scales" lasting only a few seconds to 12-hour tidal scales, to lunar and annual cycles. Minor variations in the small scale dynamics can have a big impact, Stacey says. Ignoring how the various size and time scales are intertwined makes it impossible to adequately represent the physical properties in computer models and test various hypotheses about the ocean-Bay exchanges.

"The thing I like about field studies is that we're not idealizing," he says. "We capture the real physics and then go into a computer modeling stage."

Most recently, Stacey and his team began unraveling a long-standing mystery of ocean-estuary exchange. As part of the Flux Observations at the Golden Gate (FOGG) project, the researchers are not only studying how much salt and other materials move between the Bay and the ocean, but why this happens at all. The researchers compared their measurements of the flux of salt coming and out of the Bay against theoretical amounts predicted based on the flow of water from the rivers upstream.

Your Turn

In what ways do you believe Stacey's research might impact California's water policy?

We want to hear from you...

"Measurements have never been made this way before with such a high level of detail," he says. "Finally, we can really peel back the layers of these mechanisms to determine which ones are most important.

The goal now is to identify the specific physical mechanisms--wind or tides, for example--that are creating the flux.

"There are a vast number of unanswered but interrelated questions," Stacey says. "It's very detailed work, but I get excited thinking about how it may affect ecosystem dynamics and California water policy."


Related Sites

Mark Stacey’s home page

Flux Observations at the Golden Gate (FOGG)

Lab Notes is published online by the Public Affairs Office of the UC Berkeley College of Engineering. The Lab Notes mission is to illuminate groundbreaking research underway today at the College of Engineering that will dramatically change our lives tomorrow.

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Writer, Researcher: David Pescovitz
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